.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
.. "gallery/viser/05_bodies_points.py"
.. LINE NUMBERS ARE GIVEN BELOW.

.. only:: html

    .. note::
        :class: sphx-glr-download-link-note

        :ref:`Go to the end <sphx_glr_download_gallery_viser_05_bodies_points.py>`
        to download the full example code.

.. rst-class:: sphx-glr-example-title

.. _sphx_glr_gallery_viser_05_bodies_points.py:


Bodies and points in Viser
==========================

Display a browser-based 3D scene with volume slices, an isosurface body, and
sparse pick/marker points.


.. image:: ../../_static/cigvis/viser/05.png
    :alt: image
    :align: center

.. GENERATED FROM PYTHON SOURCE LINES 18-63

.. code-block:: Python


    # sphinx_gallery_thumbnail_path = '_static/cigvis/viser/05.png'


    import numpy as np
    from pathlib import Path

    from cigvis import viserplot


    root = Path(__file__).resolve().parent.parent.parent

    seisp = root / 'data/co2/sx.dat'
    lxp = root / 'data/co2/lx.dat'
    ni, nx, nt = 192, 192, 240
    sx = np.fromfile(seisp, np.float32).reshape(ni, nx, nt)
    lx = np.fromfile(lxp, np.float32).reshape(ni, nx, nt)

    # attribute = np.abs(sx)
    # level = np.percentile(attribute, 99.2)

    points = np.array([
        [48, 46, 72, 0.1],
        [82, 120, 110, 0.5],
        [132, 80, 150, 0.9],
        [160, 155, 190, 1.0],
    ], dtype=np.float32)

    nodes = viserplot.create_slices(sx)
    nodes += viserplot.create_bodies(
        lx,
        level=0.4,
        margin=0.0,
        filter_sigma=1,
    )
    nodes += viserplot.create_points(
        points,
        color=None,
        cmap='jet',
        clim=[0, 1],
        r=6,
        point_shape='circle',
    )

    viserplot.plot3D(nodes)


.. _sphx_glr_download_gallery_viser_05_bodies_points.py:

.. only:: html

  .. container:: sphx-glr-footer sphx-glr-footer-example

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download Jupyter notebook: 05_bodies_points.ipynb <05_bodies_points.ipynb>`

    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download Python source code: 05_bodies_points.py <05_bodies_points.py>`

    .. container:: sphx-glr-download sphx-glr-download-zip

      :download:`Download zipped: 05_bodies_points.zip <05_bodies_points.zip>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_